You did the right thing.
I would rather spend a few minutes pulling plugs than scratching my head trying to find electrical faults and then spending money on something that failed because I was too lazy to do it right.
I had my frame welded with gussets. I pulled the battery, the coil, disconnected or removed anything with a diode in it, and pulled the fuse. The welder knew enough to ground right next to the work, but I was in a belt- and- suspenders mood. Only a few minutes time both in and out. No regrets, but likely overdoing it. If I had been working away from the center of the bike like the rear rack I would not have been so fussy. -GB